Leung CS, Douglass SM, Morselli M, Obusan MB, Pavlyukov MS, Pellegrini M, Johnson TL. 2019. H3K36 Methylation and the Chromodomain Protein Eaf3 Are Required for Proper Cotranscriptional Spliceosome Assembly. Cell Reports, 27(13):3760-3769. PMID: 31242410
Edwards, S.R. and T.L. Johnson. 2019. Intron RNA Sequences Promote Survival. 565: 578-579. PMID: 30683935
Douglass, S., Leung, C.S. and T.L. Johnson. 2019. Extensive Splicing across the Saccharomyces cerevisiae genome. Bioxdoi: https://doi.org/10.1101/515163
Leung, C.S. and T.L. Johnson. 2018. The Exon Junction: The Multi-Tasking Guardian of the Transcriptome. Molecular Cell. 72:799-801. PMID: 30526869
Davis-Turak, J., Johnson, T.L., and Hoffmann, A. 2018. Mathematical Modeling identifies potential gene structure determinants of cotranscriptional control of alternative pre-mRNA splicing Nucleic Acids Res. 46:10598-10607. PMID: 30272246
Awad, A.*, Venkataraman, S.* Nag, A., Galivanche, A.R, Bradley, M, Neves, L.T. Douglass, S. Clarke, C.F. and T.L. Johnson. 2017. Chromatin remodeling SWI/SNF complex regulates Coenzyme Q6 synthesis and a metabolic shift to respiration in S. cerevisiae via regulation of splicing. J. Biol. Chem. PMID: 28739803
Neves L.T., Douglass S., Spreafico R., Venkataramanan S., Kress T.L., and Johnson T.L., The histone variant H2A.Z promotes efficient cotranscriptional splicing in S. cerevisiae. Genes Dev, 31(7):702-717 (2017).
Venkataramanan S., Douglass S., Galivanche A.R., and Johnson T.L., The chromatin remodeling complex Swi/Snf regulates splicing of meiotic transcripts in Saccharomyces cerevisiae. Nucleic Acids Res, 45(13): 7708-7721(2017).
Hossain, M.A., Claggett, J.M., Edwards, S.E., Shi, A., Pennebaker, S., Cheng, M., Hasty, J., and Johnson, T.L., Post-transcriptional regulation of Gcr1 expression and activity are crucial for metabolic adjustment in response to glucose availability. Molecular Cell, 62(3):346-58 (2016).
Johnson T.L. and Ares, M. Jr. SMITten by the Speed of Splicing, Cell (Preview) 7;165(2):265-7 (2016)
Davis-Turak, J.C., Allison, K. Shokhirev, M.N., Ponomarenko, P. Tsimring, L.S., Glass, C. K. Johnson, T.L., and Hoffmann, A. Considering the kinetics of mRNA synthesis in the analysis of the genome and epigenome reveals determinants of co-transcriptional splicing, Nucleic Acids Res 43 (2): 699-707 (2015).
Merkhofer, E.C., Hu, P., and Johnson, T.L., Introduction to cotranscriptional RNA splicing, Methods Mol Biol 1126: 83-96 (2014).
Hossain, M.A. and Johnson, T.L., Using yeast genetics to study RNA splicing, Methods Mol Biol 1126: 285-298 (2014).
Hossain, M.A., Chung, C., Pradhan, S.K., and Johnson, T.L., The yeast cap binding complex modulates transcription factor recruitment and establishes proper histone H3K36 trimethylation during active transcription, Mol Cell Biol 33 (4): 785-799 (2013).
Brangwynne and Johnson, T.L., The micro and macro of RNA function, Mol. Biol. Cell 24 (6): (2013).
Merkhofer, E. and Johnson, T.L., U1 snRNA Rewrites the “script”, Cell 150 (1): 9-11 (2012).
Johnson, T.L. and Vilardell, J., Regulated pre-mRNA splicing: the ghostwriter of the eukaryotic genome, Biochem. Biophys. Acta: Gene Regulatory Mechanisms (2012).
Baumgartner, B.L., Bennett, M.R., Ferry, M., Johnson, T.L., Tsimring, L.S., Hasty, J., Antagonistic gene transcripts regulate adaptation to new growth environments, Proc Natl Acad Sci USA 108 (52): 21087-21092 (2011).
Hossain, M.A., Rodriguez, C.M., and T.L. Johnson, Key features of the two-intron Saccharomyces cerevisiae gene SUS1 contribute to its alternative splicing, Nucleic Acids Res 39 (19): 8612-8627 (2011).
Gunderson, F.Q., Merkhofer, E.C. and T.L. Johnson, Dynamic histone acetylation is critical for co-transcriptional spliceosome assembly and spliceosomal rearrangements, Proc Natl Acad Sci USA 108 (5): 2004-2009 (2011).
McKay, S.L. and Johnson, T.L., An investigation of a role for the U2 snRNP spliceosomal components in regulating transcription, PLoS ONE 6 (1): (2011).
McKay, S. and T.L. Johnson, A bird’s eye view of post-translational protein modifications and the regulation of spliceosome dynamics, Molecular Biosystems (2010).
Gunderson, F.Q. and T.L. Johnson, Acetylation by the Transcriptional Coactivator Gcn5 Plays a novel role in co-transcriptional Spliceosome assembly, PLoS Genetics 5 (10): (2009).
Hossain, M.A., Claggett, J.C., Nguyen, T., and T.L. Johnson, The cap binding complex influences H2B ubiquitination by facilitating splicing of the SUS1 pre-mRNA, RNA 15: 1515-1527 (2009).
Cheng, C.S. Johnson, T.L. and A. Hoffmann, Epigenetic control: Slow and global, Nimble and local, Genes and Development 22: 1110-1114 (2008).